/*
 * Copyright 2006-2018 The MZmine 2 Development Team
 * 
 * This file is part of MZmine 2.
 * 
 * MZmine 2 is free software; you can redistribute it and/or modify it under the terms of the GNU
 * General Public License as published by the Free Software Foundation; either version 2 of the
 * License, or (at your option) any later version.
 * 
 * MZmine 2 is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without
 * even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
 * General Public License for more details.
 * 
 * You should have received a copy of the GNU General Public License along with MZmine 2; if not,
 * write to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301
 * USA
 */

package net.sf.mzmine.modules.peaklistmethods.dataanalysis.rtmzplots.logratioplot;

import java.awt.Window;

import net.sf.mzmine.datamodel.PeakList;
import net.sf.mzmine.datamodel.RawDataFile;
import net.sf.mzmine.parameters.Parameter;
import net.sf.mzmine.parameters.impl.SimpleParameterSet;
import net.sf.mzmine.parameters.parametertypes.ComboParameter;
import net.sf.mzmine.parameters.parametertypes.MultiChoiceParameter;
import net.sf.mzmine.parameters.parametertypes.selectors.PeakListsParameter;
import net.sf.mzmine.util.ExitCode;
import net.sf.mzmine.util.PeakMeasurementType;

public class LogratioParameters extends SimpleParameterSet {

  public static final PeakListsParameter peakLists = new PeakListsParameter(1, 1);

  public static final MultiChoiceParameter<RawDataFile> groupOneFiles =
      new MultiChoiceParameter<RawDataFile>("Group one", "Samples in group one", new RawDataFile[0],
          null, 1);

  public static final MultiChoiceParameter<RawDataFile> groupTwoFiles =
      new MultiChoiceParameter<RawDataFile>("Group two", "Samples in group two", new RawDataFile[0],
          null, 1);

  public static final ComboParameter<PeakMeasurementType> measurementType =
      new ComboParameter<PeakMeasurementType>("Peak measurement type",
          "Determines whether peak's area or height is used in computations.",
          PeakMeasurementType.values());

  public LogratioParameters() {
    super(new Parameter[] {peakLists, groupOneFiles, groupTwoFiles, measurementType});
  }

  @Override
  public ExitCode showSetupDialog(Window parent, boolean valueCheckRequired) {

    PeakList selectedPeakLists[] = getParameter(peakLists).getValue().getMatchingPeakLists();
    RawDataFile plDataFiles[] = selectedPeakLists[0].getRawDataFiles();

    getParameter(groupOneFiles).setChoices(plDataFiles);
    getParameter(groupTwoFiles).setChoices(plDataFiles);

    return super.showSetupDialog(parent, valueCheckRequired);
  }

}
